PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10012253m

Common Name

EUTSA_v10012253mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Protein Properties

Length: 103aa MW: 11731.5 Da PI: 8.4367

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10012253m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.9	5.5e-11	8	96	2	89
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +k+ t+ dv+ ++ l+l+k+ ++ + +++e++ ++ ++d + +s+ v+l +++s++y ++GW++ +a++L+ D+v ++ ++ ++ Thhalv10012253m 8 VKKITNTDVSCKNGLSLSKPKMDYIlrkmgISVPENGLQVEIQD-NDKSYWVTL--KQNSNGYHVGTGWSNIKNAKDLEKDDVVQLYWKD-TK 96 6999*****************5559999866677888888888.55777799..9***************************999543.43 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.82E-13	3	96	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.7E-12	3	94	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.4E-4	7	102	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MDPNMLIVKK ITNTDVSCKN GLSLSKPKMD YILRKMGISV PENGLQVEIQ DNDKSYWVTL 60 KQNSNGYHVG TGWSNIKNAK DLEKDDVVQL YWKDTKFIFS ME*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10012253m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020867663.1	2e-38	B3 domain-containing protein At1g08985
Swissprot	Q8GWU1	9e-35	Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBL	V4KTT3	2e-68	V4KTT3_EUTSA; Uncharacterized protein
STRING	XP_006393487.1	3e-69	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14170	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08985.1	4e-37	B3 family protein

Link Out ? help Back to Top
Phytozome	Thhalv10012253m
Entrez Gene	18010477