PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012266m
Common NameEUTSA_v10012266mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 138aa    MW: 15998.8 Da    PI: 4.4413
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012266mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.61.3e-191811784
                     E--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3 17 vlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
                     ++p+++a +h             g++ e   +++++d+   +W++k++y ++s+++v+t+GW++Fvk+++Lke+D+++F+ 
  Thhalv10012266m  1 MIPNTYAVKHlpyisidqndreeGEIAEDVEEVVVYDKAMTQWKFKYCYLRSSQSFVFTRGWNGFVKEKNLKENDVILFYE 81
                     58888888888888888878888666667779***********************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-16184IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.4621100IPR003340B3 DNA binding domain
CDDcd100178.16E-14180No hitNo description
PfamPF023629.7E-17283IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-17284IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.5E-4794IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MIPNTYAVKH LPYISIDQND REEGEIAEDV EEVVVYDKAM TQWKFKYCYL RSSQSFVFTR  60
GWNGFVKEKN LKENDVILFY ECDDVKTLQG QSKILMIDVQ YSSDNGFVDS KGVNNKVDES  120
SDEERKTGND FDPQVRR*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012266m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393078.12e-62AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6883e-51RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLV4KGS29e-97V4KGS2_EUTSA; Uncharacterized protein
STRINGXP_006393118.11e-97(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.18e-47RAV family protein