PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012473m
Common NameEUTSA_v10012473mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 1223aa    MW: 138522 Da    PI: 7.3399
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012473mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.141146180IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.495182216IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.971255289IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.316290320IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.75322356IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.832357391IPR002885Pentatricopeptide repeat
PfamPF015350.14359389IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.1E-4359393IPR002885Pentatricopeptide repeat
PfamPF130414.8E-11391440IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.227392426IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.8E-5394425IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.117427461IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-5430458IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.024527561IPR002885Pentatricopeptide repeat
PfamPF015350.025531558IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.188598632IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.659633667IPR002885Pentatricopeptide repeat
PfamPF015351.2636647IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.478668702IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.805734768IPR002885Pentatricopeptide repeat
PfamPF015351.2737764IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.412798832IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.638833867IPR002885Pentatricopeptide repeat
PfamPF015350.0052836865IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.364904938IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.262939973IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.0769741008IPR002885Pentatricopeptide repeat
PfamPF015350.00279801005IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-49801007IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.58810431077IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.6310781113IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.80211141148IPR002885Pentatricopeptide repeat
PfamPF015350.6811161144IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.51111491183IPR002885Pentatricopeptide repeat
Sequence ? help Back to Top
Protein Sequence    Length: 1223 aa     Download sequence    Send to blast
MHNLFSISSN STRPRILNKV SSLICRYSYA VFSITKSASP SSPQGNDSAT QSNNVSSSFS  60
LLSAAAENRG VTGSLLKDLL LDLSDVVPTI TRRFRRFPGL KPENVLELLL GFQSELQRGG  120
VEGRKVRPLW EIFRWASGQY KGFKHLPLAC EIMASMLIME GMVKDVELLL LEMDNNGDTL  180
YNEGVFCELI QKYVDDFNSR KAVMLFDWMR RKGLVPLNSC YQTLIDHLVR VHRTESAYRI  240
CLDWLETTAE SNDVNIDRFG KVIELLCLDQ RVQEARVLAR KLAALGCNPN SSIYSKICLG  300
YSEKQDFEDL LSFIGELKYE PDVFVGNRIV HSLCRKFGTE RAYVYMEELE HLGFKPDEVT  360
FGILIGWCCY EGDIKRAFLY LSEITSKGLK PDVYSYNAIL SGLFRKGLWQ HTPCILDEMK  420
ENGMLLSLST FKIMVTGYCK ARRFEEAKAI VNEMFGYGLI EASKVGDPLS EAFSLVGFDP  480
LAVRLKRDNN SGFSKAEFFD DLGNGLYLDT DLDAYEQRVN MVLDRSVLPE FNSLIVRACN  540
DGDLQTALEL LDEMARWGQK LSRRGFTVLM KSLCASRSHV RVSISIMGKW PKLANLLDGE  600
TLNFLVQEYC KKGFSRQSKL IFHRMVQMHL PIDNATYTSL ISCFCKKETL NNLLNVWDAA  660
QNANWLPDLD NCGAIWECLL QKGLVEEAFK LFERISISQS EACRVFVEKL TVLGFSHIAH  720
SVVKRLEGEG YVVEDEVYNH LVKGLYKDKK DLAAFAMLEE MLDKKQIPSL GSCLSLIPRL  780
CGANKIEQAF TLAEQLDSSS LNYALLEELC FAGRILDAEN QLWIMLSNGF LPDKAIYNVM  840
FQGYCKANNS RKVQELLGIL VRKNVICSVT SYREYVRKMC SERQFLSALN LKEFLLIGES  900
NPGGVITYNL LIFYLFRSKN RLKVNKILLE MRGRGFLPDQ TTLNFLVHGY SLCGDDSSSL  960
QYLSAMISEG MKPSNRSLRV VISSLCDNGD VKKALNLWQV MESKGWVFGS SVVQTKIAES  1020
LISRGEILKA EDFLIRVTRN GMMAPSYDNL IKKLSDRGSL DIAVHLLNTV LKNRSIPDPS  1080
SYDSVINGFL RCNNQLDKAM DFHTEMMELG LRPSMSTWSG LVHKYCEACQ VLESERLIKS  1140
MVESSETPSQ EMFKTVIDRF RVEKNTVKAT EMMEMMQKCG YEIDFETHWS LISNMSSCKE  1200
NKTAGQGFLS RLLSGNGFAW KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9g_C2e-3920012022452pentatricopeptide repeat protein dPPR-U8C2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012473m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012477.10.0pentatricopeptide repeat-containing protein At5g15280, mitochondrial
SwissprotQ9LXF40.0PP384_ARATH; Pentatricopeptide repeat-containing protein At5g15280, mitochondrial
TrEMBLV4N7B20.0V4N7B2_EUTSA; Uncharacterized protein
STRINGXP_006400048.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1096933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.24e-27pentatricopeptide (PPR) repeat-containing protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Carrie C,Venne AS,Zahedi RP,Soll J
    Identification of cleavage sites and substrate proteins for two mitochondrial intermediate peptidases in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(9): p. 2691-708
    [PMID:25732537]