PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012552m
Common NameEUTSA_v10012552mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CAMTA
Protein Properties Length: 1021aa    MW: 114861 Da    PI: 5.8161
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012552mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1186.33.1e-58211382118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      l+e ++rwl++ ei++iL+n++k+++++e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+++vl+cyYah+e n++f
  Thhalv10012552m  21 LSEaQHRWLRPAEICEILQNYQKFHIASESPSRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSIDVLHCYYAHGEGNENF 114
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrrcyw+L+++l +iv+vhylevk
  Thhalv10012552m 115 QRRCYWMLDQDLMHIVFVHYLEVK 138
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143784.34217143IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-8520138IPR005559CG-1 DNA-binding domain
PfamPF038592.9E-5123137IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.68E-13427512IPR014756Immunoglobulin E-set
PfamPF127961.9E-7608686IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.8E-17609721IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.537609720IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-18610720IPR020683Ankyrin repeat-containing domain
CDDcd002045.36E-13615718No hitNo description
PROSITE profilePS5008811.22659691IPR002110Ankyrin repeat
SMARTSM002480.0029659688IPR002110Ankyrin repeat
SuperFamilySSF525403.72E-8833884IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.017834856IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602836864IPR000048IQ motif, EF-hand binding site
PfamPF006125.3E-4836855IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0029857879IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.322858882IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4860879IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MADRGSFGFI STPRLDMERL LSEAQHRWLR PAEICEILQN YQKFHIASES PSRPASGSLF  60
LFDRKVLRYF RKDGHNWRKK KDGKTIKEAH EKLKVGSIDV LHCYYAHGEG NENFQRRCYW  120
MLDQDLMHIV FVHYLEVKGN RTSTGMKENN SNSVNGTASV NIDSTASPTS TLSSLCEDAD  180
SGDSHQASSI LRVSPEPQTG NRNGWTSASG MRSLSQCHGN RVKENDSHRL FDVQAWDPVE  240
NLVTRYDQAC DNLLTQSSNN ESMLVEEHTD KGRVLTAEHL RNPLQTQLNW QDDQSLPKWP  300
VDLVSHSGTT DDTDLALFEQ SAQDNFETFS NLLGSEIQQS VGNSFQAPPS SMEIEYIPVK  360
KSLLRHEDSL KKVDSFSRWA SKELGEMEDL QMQSSRGDIA WTTVDCETAV AGPSLSPSLS  420
EDQRFSIVDF WPKCAHTDAE VEVMVIGTFL LSPEEVTKYN WSCMFGEVEV PAEILVDGVL  480
CCHAPPHTAG QVPFYITCSN RFACSELREF DFLSGSTKKI DAADLYGTYT NEASLQLRFE  540
RLLARRASVH EHHIFEDVEE KRRKISKIML LKEEKEYLLP GTCERDSPKQ EPKGLLIREQ  600
LEEELYAWLI HKVTEQGKGP NILDEDGQGV LHFVAALGYD WAIKPILAAA VNINFRDANG  660
WSALHWAAFS GREETVAVLV SLGADAGALT DPSPELPLGK TAADLAYVNG HRGISGFLAE  720
SSLTSYLEKL TMDSKENSSA KACGPKAVQT VSERTAAPMS YGDVPETLSL KDSLTAVRNA  780
TQAADRLHQV FRMQSFQRKQ LTEFGNDDEN DISNELAVSF ASSTIKNPGH SDVSVHSAAT  840
HIQKNYRGWK KRKEFLLIRQ RVVKIQAHVR GHQVRKQYKP IVWSVGLLEK IILRWRRKGS  900
GLRGFKRNAV AKTVEPEPPV SVVCPKIPEE DDYDFLEKGR KQTEERLQKA LTRVKSMVQY  960
PEARDQYRRL LTVVEGFREN EASSSSSMNN REELLVNCEE DDLIDIDSLL NDDTLMSLSP  1020
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012552m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287400.0AK228740.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 1, complete cds, clone: RAFL16-07-H14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399418.10.0calmodulin-binding transcription activator 1 isoform X1
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLV4N5T00.0V4N5T0_EUTSA; Uncharacterized protein
STRINGXP_006399418.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein