PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013016m
Common NameEUTSA_v10013016mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 604aa    MW: 68643.3 Da    PI: 6.1719
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013016mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3963.9e-1212276011374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkf 93 
                      l++lL++cA+av+s d+++a++ L++++ ++s++gd +qR+a+yf+eAL+ar+++  ++ ++ a+p+s+ts   +++ l+a+klf++++Pi+  
  Thhalv10013016m 227 LRSLLTQCAQAVASFDQRRATEKLKEIRSNSSSSGDGIQRMAFYFAEALEARITGiISPPVSTAFPSSTTS---MVDILKAYKLFVHACPIYVA 317
                      6899***************************************************7788888888888888...9******************* PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++aN+ I+e + +++++HiiDf++ +G+QWp+Ll aL++Rp+gpp+lR+Tg++ p+sg   ++++eetg+rL++f++ ++vpfefn+ +ak+
  Thhalv10013016m 318 DYFAANKSIYELALKATKLHIIDFGVLYGFQWPCLLLALSKRPGGPPMLRVTGIELPQSGfrPSDRVEETGRRLKRFCDMFNVPFEFNF-IAKK 410
                      ***********************************************************9*****************************.7*** PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      +e+++l+e+ ++pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+lfd++++++ +e+
  Thhalv10013016m 411 WESISLDEITINPGETTVVNCIHRLQYTPDETVSLNSPRDTVLKLFRDINPDLFVFAEINGTYNSPFFMTRFREALFHFSSLFDMFDTTIQAED 504
                      *****************************************************************************************99998 PP

             GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                        ++r+ +Erell r++++v++ egaer++r et+++W+ r+ +aGFkp+++s++++k+a+ ++rk + + + ++++++++++gWk+r ++++S
  Thhalv10013016m 505 eyKNRALLERELLVRDAMSVISSEGAERFARPETYKQWQVRILRAGFKPATISKRIMKEAREIVRKNYHKDFLIDSDNHWMLQGWKGRVIYAFS 598
                      899*****************************************************************888*********************** PP

             GRAS 372 aWr 374
                      +W+
  Thhalv10013016m 599 CWK 601
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.011201581IPR005202Transcription factor GRAS
PfamPF035141.4E-118227601IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDALLQVSVD DFRFQNGSGS GSCCKPRNNL DSDNNLFPNF NEPEPQNHSP PNDSPPTICL  60
DNSPVLKYIN DMLMDEEDFA EESRFLQDNL ALQAAERSFY EILQQQSPES DHNTSSSHQN  120
SGDPFSTTTT LTDSAALVSN GESQRRYRHR NDEEDDLENG RRNKQPAIFI SEMEELAVKF  180
EHVLLVCKAN QEEEKSVATK QSQPNRAGRG KGSSNRSKAQ KTSPVDLRSL LTQCAQAVAS  240
FDQRRATEKL KEIRSNSSSS GDGIQRMAFY FAEALEARIT GIISPPVSTA FPSSTTSMVD  300
ILKAYKLFVH ACPIYVADYF AANKSIYELA LKATKLHIID FGVLYGFQWP CLLLALSKRP  360
GGPPMLRVTG IELPQSGFRP SDRVEETGRR LKRFCDMFNV PFEFNFIAKK WESISLDEIT  420
INPGETTVVN CIHRLQYTPD ETVSLNSPRD TVLKLFRDIN PDLFVFAEIN GTYNSPFFMT  480
RFREALFHFS SLFDMFDTTI QAEDEYKNRA LLERELLVRD AMSVISSEGA ERFARPETYK  540
QWQVRILRAG FKPATISKRI MKEAREIVRK NYHKDFLIDS DNHWMLQGWK GRVIYAFSCW  600
KPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-452226011375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013016m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400957.10.0scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLV4KWN00.0V4KWN0_EUTSA; Uncharacterized protein
STRINGXP_006400957.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]