PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013367m
Common NameEUTSA_v10013367mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family AP2
Protein Properties Length: 493aa    MW: 53935.1 Da    PI: 7.2525
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013367mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-17164213155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Thhalv10013367m 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 213
                      78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-15164221IPR016177DNA-binding domain
CDDcd000182.15E-11164220No hitNo description
PfamPF008471.2E-8164213IPR001471AP2/ERF domain
SMARTSM003801.3E-30165227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16165221IPR001471AP2/ERF domain
PROSITE profilePS5103217.359165221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MLDLNLDVDS AESTQNGRDS AAVKRVSGAI LNQMDESVTS NSSVVNAEAS SCIDGEEELC  60
STRAVKFQFE ILKGGGGKGE EEEEEEVEER SAVMTKEFFP VAKGDGEGMY FLDSSAQSSR  120
CPVDISFQRG NLGGDFPGGD SAPVMQPPSQ PVKKSRRGPR SKSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAVK FRGLEADINF IISDYEEDLK QMANLSKEEV  240
VQVLRRQSSG FSRNNSRYQG VALQKIGNWG AQMEQFHGNM ACDKAAIKWN GREAASLIEP  300
HASRMTPEAA NVKLDLNLGI SLSLGDGPKQ KDRGLRLHHA PNSIVCGRNS KMENHMAATT  360
CDTSFNFLKR GSEHLINRHV LPSAFFSPME RTPEKGFMPR SHQSFPARTW QVQDQSSSGT  420
ATTATASPLF SNAASSGFSL SATRPPSSST ATLHPSHPFL NLNMPGLYVI HPSDYASQQH  480
HPHLMNRSQP PP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00616PBMTransfer from AT5G60120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013367m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529460.0AK352946.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-B14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400879.10.0AP2-like ethylene-responsive transcription factor TOE2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLE4MWP90.0E4MWP9_EUTHA; mRNA, clone: RTFL01-19-B14
TrEMBLV4LIS40.0V4LIS4_EUTSA; Uncharacterized protein
STRINGXP_006400879.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.10.0target of early activation tagged (EAT) 2