PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013460m
Common NameEUTSA_v10013460mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 467aa    MW: 49779.3 Da    PI: 8.3668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013460mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-125378227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C +++rtG C yG+rC+F+H++
  Thhalv10013460m 53 DEPDCIYYLRTGVCGYGSRCRFNHPR 78
                     6899********************96 PP
2zf-CCCH37.44.3e-12100124327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++f+rtGtCk+G++Ck++H++
  Thhalv10013460m 100 QPVCQHFLRTGTCKFGASCKYHHPR 124
                      789********************96 PP
3zf-CCCH39.87.4e-13147171226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG+Ck+G++C+F+H+
  Thhalv10013460m 147 GEKECSYYMRTGQCKFGSTCRFHHP 171
                      7899********************9 PP
4zf-CCCH39.59.6e-13295320126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +++++C++f+rtG Ck+G +Ck++H+
  Thhalv10013460m 295 PGQPECQYFMRTGDCKFGVSCKYHHP 320
                      5789*********************9 PP
5zf-CCCH34.73e-11340365126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t+ C++fa+ G+Ck+G+ CkF H+
  Thhalv10013460m 340 PGTAQCSHFAQHGICKFGPACKFDHS 365
                      689**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0985179IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-45178IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-95378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65580IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-55778IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.71397125IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-797124IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-10100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5102123IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6145172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356145173IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10147171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4151170IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253294322IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10296320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5298322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4300320IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5339366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474339367IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8340365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6340367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4343366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MERYGRAGEE ESRSDPSLEW TARESETGIE ASMWRLGLRG GGGGGESYPE RPDEPDCIYY  60
LRTGVCGYGS RCRFNHPRNR APVLGGLRTE AGEFPERLGQ PVCQHFLRTG TCKFGASCKY  120
HHPRGGGRGD SVTPTSLSYM GFPLRPGEKE CSYYMRTGQC KFGSTCRFHH PVPPGVQSPS  180
QQQQQQQSPA LYPSLQSQSV PSSQQFGVVV ARPQLLPGSY LQSPYGYSQM VLPPGMVPYS  240
GWNPYQASVS TIPSRGTQAS IGSSSVYGIT PLSPSAPAYQ SGPSSMKEQS FPQRPGQPEC  300
QYFMRTGDCK FGVSCKYHHP LEAASPKGVT LSNIGLPLRP GTAQCSHFAQ HGICKFGPAC  360
KFDHSISSSS LSYSPSASSL TDMPVAPYPL GSSSLGTLAP SSSSSSDQRT ELLSSSSIKP  420
KTTTSGGSET VATGVSSSSM TSGVSHSETA ETKNNDSASI ETKTSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013460m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400404.10.0zinc finger CCCH domain-containing protein 58
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLV4LHG20.0V4LHG2_EUTSA; Uncharacterized protein
STRINGXP_006400404.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]