PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013743m
Common NameEUTSA_v10013743mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 396aa    MW: 43742.8 Da    PI: 8.0245
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013743mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.3e-112348126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C+++ rtG C++G++C+F+H+
  Thhalv10013743m 23 PGEPDCSYYIRTGLCRFGSTCRFNHP 48
                     5789*********************8 PP
2zf-CCCH37.54e-127094327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     +++C f+++tGtCk+G +CkF+H++
  Thhalv10013743m 70 QPECEFYLKTGTCKFGVTCKFHHPR 94
                     799********************96 PP
3zf-CCCH37.63.6e-12113137327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +  C++f+rtG+Ck+G++CkF+H++
  Thhalv10013743m 113 EDDCSYFLRTGHCKFGGTCKFNHPQ 137
                      578********************97 PP
4zf-CCCH36.48.7e-12262288127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f+++tG Ck+G  CkF+H++
  Thhalv10013743m 262 PGQPECEFYMKTGDCKFGTVCKFHHPR 288
                      5789*********************96 PP
5zf-CCCH37.83.1e-12309334227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++lC f++r+G+Ck+G++CkF H++
  Thhalv10013743m 309 GEPLCVFYSRYGICKFGPSCKFDHPM 334
                      579*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.9E-52249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4552250IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-72448IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-52750IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-42849IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-56794IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2116795IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-97094IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-67196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-47394IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389110138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6111139IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9113137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4116137IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5261288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929261289IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-8263288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5265290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4267289IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605307335IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5310334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4312332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MWQMNLGSDE TMSGDDGSYP ERPGEPDCSY YIRTGLCRFG STCRFNHPHD RKLVIATERI  60
KGEFPERIGQ PECEFYLKTG TCKFGVTCKF HHPRNKAGRV SHSVLGYPLR PNEDDCSYFL  120
RTGHCKFGGT CKFNHPQSQS TNLMVSLRGS PVYSALQSPT GQQSYSWPRP SFVANSPRWQ  180
DPSSFASLLL PQGGVVSAQG WNTYGSLSPS GSDQAYRNHQ QSDAKETSGS RGGLFSSGEH  240
SGNSVPFGYY ALPRENVFPE RPGQPECEFY MKTGDCKFGT VCKFHHPRDR QTPAPDCLLS  300
PVGLPLRLGE PLCVFYSRYG ICKFGPSCKF DHPMRIFTYN NNASPSSSSL HQETTTITTQ  360
LRNLLVSSSV EAAPTTLPSV SETTSAKDTI VDVQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013743m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1388721e-166AF138872.1 Arabidopsis thaliana zinc finger protein 3 (ZFN3) mRNA, complete cds.
GenBankAY0846341e-166AY084634.1 Arabidopsis thaliana clone 113763 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400193.10.0zinc finger CCCH domain-containing protein 57 isoform X2
SwissprotQ8L7N80.0C3H57_ARATH; Zinc finger CCCH domain-containing protein 57
TrEMBLV4N7L60.0V4N7L6_EUTSA; Uncharacterized protein
STRINGXP_006400193.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.10.0zinc finger nuclease 3
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]