PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013850m
Common NameEUTSA_v10013850mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 376aa    MW: 41975.9 Da    PI: 7.0579
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013850mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32195249155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Thhalv10013850m 195 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 249
                      68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.891192252IPR017930Myb domain
SuperFamilySSF466893.05E-17192249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28194250IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23195250IPR006447Myb domain, plants
PfamPF002491.3E-8199248IPR001005SANT/Myb domain
PfamPF143793.1E-20279326IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDNINFEFSN ASQGSRLQSQ PQPPQPFNLQ DVNMIHYNQS SPWTTETFSD FTPYDCTANP  60
SFSGQCSLSK PYPSSLHPYH HQSSDPPSLD QSESMVPMQP LPDRYLKPLY QRSCANDFAA  120
ANASSASYSL SFEASQDSQG LCRSTYSNSN VTQLNFSSSH HQPKQTHPRF SSPPSFSTHG  180
SGSMAPNCGT ITGNKTRIRW TQDLHEKFVE CVNRLGGADK ATPKAILKLM DSEGLTIFHV  240
KSHLQKYRIA KYIPDSEEGK FEKRACAKEL SQLDTKTGVQ IKEALQLQLD VQRHLHEQLE  300
IQRNLQLRIE EQGKQLKIMI EQQQKTKESL LKTPNTEASL PLSAPDHSPP PVSIQDPEAL  360
MLTNYGDALL HSKIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013850m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266440.0AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11.
GenBankBT0126580.0BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399156.10.0myb family transcription factor PHL5
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLV4LAE30.0V4LAE3_EUTSA; Uncharacterized protein
STRINGXP_006399156.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.10.0G2-like family protein