PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014025m
Common NameEUTSA_v10014025mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 341aa    MW: 37320.1 Da    PI: 5.2391
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014025mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-1295139147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I   +g  +t  q++s+ qky
  Thhalv10014025m  95 RESWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 139
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.54E-1689145IPR009057Homeodomain-like
PROSITE profilePS5129414.94290144IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-693145IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-1893142IPR006447Myb domain, plants
SMARTSM007177.6E-1094142IPR001005SANT/Myb domain
PfamPF002493.8E-1095139IPR001005SANT/Myb domain
CDDcd001671.85E-797140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MWILSFLPLS LSLYLSISLS LYLSLCCAIS LNDRYLQNTL MTSSPSNNPV VAEDKPTETS  60
TVLTETTTTV ASSSMEAAEA PEKKVRKAYT ITKSRESWTE GEHDKFLEAL QLFDRDWKKI  120
EDFVGSKTVI QIRSHAQKYF LKVQKNGTLA HVPPPRPKRK AAHPYPQKAS KNAQMSLHVS  180
MAFPTQMNNV PGYASWDDDT SALLNIAVSG VILPEDEVGT LCGGEVAIES NGTTSASSPS  240
ASGIGSSSRT QSDCKDLRPA NQAPSMHGLP DFAEVYNFIG SVFDPDSKGR MKKLKEMDPI  300
NFETVLLLMR NLTVNLSNPD FEPASEYFDA AEEGPEHLSS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00484DAPTransfer from AT5G02840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014025m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526240.0AK352624.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-K05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398741.20.0protein REVEILLE 4 isoform X1
SwissprotQ6R0G41e-180RVE4_ARATH; Protein REVEILLE 4
TrEMBLV4L9740.0V4L974_EUTSA; Uncharacterized protein
STRINGXP_006398741.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152131118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02840.21e-146LHY/CCA1-like 1
Publications ? help Back to Top
  1. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]