PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014032m
Common NameEUTSA_v10014032mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 340aa    MW: 38146.4 Da    PI: 7.9747
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014032mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.2e-114169533
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLee 33
                     k  rr+++NReAAr+sR+RKka++++Le 
  Thhalv10014032m 41 KTLRRLAQNREAARKSRLRKKAYVQQLES 69
                     7789***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-93385No hitNo description
SMARTSM003387.0E-737125IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.7373983IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.29E-74182No hitNo description
PfamPF001706.4E-84171IPR004827Basic-leucine zipper domain
PROSITE patternPS0003604459IPR004827Basic-leucine zipper domain
PfamPF141444.4E-31134208IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDLTNHSQFQ LPQPSKSIKK EGNRKGPGSS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK  60
KAYVQQLESC RIKLTQLEQE IQRARSQGVF FGGSLIGGDQ QQGGLAIGHG NISSEAAVFD  120
MEYTRWLEEQ QRLLNELRVA TQEHLAENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLL  180
SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL  240
EALNQSLSDS IVSDSLSPAS TQLPPHLSNF MSHMSLALNK LSALEGLVLQ ADNLRHQTIH  300
RLNQLLTTRQ EARCILAVAE YFHRLQALSS LWLARPRQD*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014032m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1327420.0HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399160.20.0transcription factor TGA10
SwissprotE3VNM40.0TGA10_ARATH; Transcription factor TGA10
TrEMBLV4LLD30.0V4LLD3_EUTSA; Uncharacterized protein
STRINGXP_006399160.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72072843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein
Publications ? help Back to Top
  1. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]