PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10014056m

Common Name

EUTSA_v10014056mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Dof

Protein Properties

Length: 336aa MW: 35704.1 Da PI: 9.1759

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10014056m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.9	4.7e-38	14	73	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+++ Thhalv10014056m 14 ETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKSCRRYWTRGGALRTVPVGGGCRRNKRTK 73 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-36	1	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-32	16	71	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MAERARLANI PLPETALKCP RCDSTNTKFC YFNNYSLTQP RHFCKSCRRY WTRGGALRTV 60 PVGGGCRRNK RTKNSGGGGS SSSGNSKSHD SATSNDQYHH RVMANSQMGP PSSSTSLSSL 120 LSSYNAGLIP GHDHNNNNNN ILGLGSALPP LKLMPPLDFT DNFTLQYGAV SAPSYHMGGG 180 SSGGNGGATA LLTGFDQWRF PTTHHQVPLL GGSDNSSSSG LYPFDHQNQT DMEQQNPGYG 240 LVTGSGQYRP KNIFHNLASS SSSSTASSAM VTATASQLAS VKMEDSNNQL NMSRQLFGNE 300 QQLWNIHGNA STAAATTSSW SDVSNNFSSS STSNI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00483	DAP	Transfer from AT5G02460	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10014056m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006398705.2	0.0	dof zinc finger protein DOF5.1
Swissprot	Q9LZ56	1e-144	DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBL	V4LK34	0.0	V4LK34_EUTSA; Uncharacterized protein
STRING	XP_006398705.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11519	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-124	Dof family protein

Link Out ? help Back to Top
Phytozome	Thhalv10014056m
Entrez Gene	18017825

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]