PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014060m
Common NameEUTSA_v10014060mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 336aa    MW: 38241.2 Da    PI: 6.2472
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014060mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.21e-55211481129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdee++++yLk+kv ++++++  ++ e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++
  Thhalv10014060m  21 LPPGFRFHPTDEEIITFYLKEKVLDSRFTA-VAMGEADLNKCEPWDLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFK 113
                      79*************************999.67***************99999***************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       kg lvg+kktLvfy+grapkgekt+Wvmheyrle
  Thhalv10014060m 114 GKGCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 148
                      9********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-6318173IPR003441NAC domain
PROSITE profilePS5100558.59421172IPR003441NAC domain
PfamPF023653.1E-2922147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAVVVEEGVV LNHGGEELVD LPPGFRFHPT DEEIITFYLK EKVLDSRFTA VAMGEADLNK  60
CEPWDLPKRA KMGEKEFYFF CQRDRKYPTG MRTNRATESG YWKATGKDKE IFKGKGCLVG  120
MKKTLVFYRG RAPKGEKTNW VMHEYRLEGK YSYHNLPKSA RDEWVVCRVF HKNNPSTTTQ  180
QMTRIPIEDL TRMDSLENID HLLDFTSLPP LIDPSFTEQP NFKPINPPTY NISSPIQPHH  240
YNTYNSIYNH QGFGSASGSG STYNNNNNNN EMIKMEQSLV SVSQETCLSS DVNAATTTEV  300
SSGPVMKQEM RMMEMVNGSK SYDDLCDLGG ILWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-5181742170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014060m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413570.0KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400375.10.0NAC domain-containing protein 87
SwissprotQ9FK440.0NAC87_ARATH; NAC domain-containing protein 87
TrEMBLV4LPP80.0V4LPP8_EUTSA; Uncharacterized protein
STRINGXP_006400375.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.10.0Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]