PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014118m
Common NameEUTSA_v10014118mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family E2F/DP
Protein Properties Length: 323aa    MW: 35750.4 Da    PI: 5.9482
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014118mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.91.4e-27103185271
          E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Thhalv10014118m 103 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpsndgtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 185
                      689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.0E-1341322IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.3E-4698191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.7E-35102185IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.4E-25104185IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-21105186IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.94E-42190293IPR014889Transcription factor DP, C-terminal
SMARTSM011381.4E-59192311IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.75E-41192304No hitNo description
PfamPF087813.2E-42193310IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTTTGSNSNH NHHDDGSVKN NNNNPSTRSW GTAVSGQSVS TSGSMGSPSS RSEQTTTVAT  60
SASDSAFIRL NNLDIQGDDT GSQGASGGKK KKRGQRAAGP DKSGRGLRQF SMKVCEKVES  120
KGRTTYNEVA DELVAEFALP SNDGTSPDQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE  180
IQWRGLPRTS LSDIEELKAE RLSLRNRIEK KTAYSQELEE QYIGLQNLIQ RNEHLYSSGN  240
APSGGVALPF ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP FELHDDNFVL KTMEFCDQVK  300
EKIVLEQKNK EQGCENSRTE PT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3796190193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014118m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398790.10.0transcription factor-like protein DPB
RefseqXP_024011777.10.0transcription factor-like protein DPB
RefseqXP_024011778.10.0transcription factor-like protein DPB
SwissprotQ9FNY20.0DPB_ARATH; Transcription factor-like protein DPB
TrEMBLV4LKB00.0V4LKB0_EUTSA; Uncharacterized protein
STRINGXP_006398790.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-159Transcription factor DP