PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014274m
Common NameEUTSA_v10014274mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family E2F/DP
Protein Properties Length: 290aa    MW: 32644.1 Da    PI: 7.2381
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014274mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.88.6e-2449131371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      + +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  Thhalv10014274m  49 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnsekplndneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 131
                      5799999999...****9999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.5E-985287IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.9E-3644135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-2847131IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.36E-1850132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.4E-2050131IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.20E-29138239IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.92E-37138279No hitNo description
SMARTSM011382.1E-50138289IPR014889Transcription factor DP, C-terminal
PfamPF087812.2E-32139259IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEMDLFVTPE KQRHNPSVSL GKTPVRRKLI VDEDSEIGSE KKGQSRTAGG GLRQFSVMVC  60
QKLEAKKITT YKEVADEIIS DFATIKQNSE KPLNDNEYNE KNIRRRVYDA LNVFMALDII  120
ARDKKEIRWK GLPITCKKDV EEVKMDRNKL MNSVQKKAAF LKELREKVSS LESLMSRNQE  180
MVVKTEGPAE GFTLPFILLE TNPHAVVEIE ISEDMQLVHL DFNSTPFSVH DDAYILKLMQ  240
EQKLQQNIIS SSSTHHQSQH SSAHSSSSSC IASGTSGPVC WNSGSIDTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-2649133990PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014274m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3190270.0AJ319027.1 Arabidopsis thaliana partial mRNA for E2F dimerisation partner protein (dp2a gene).
GenBankAK1171350.0AK117135.1 Arabidopsis thaliana At5g02470 mRNA for putative DP-2 transcription factor, complete cds, clone: RAFL16-67-D16.
GenBankBT0052860.0BT005286.1 Arabidopsis thaliana At5g02470 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398706.10.0transcription factor-like protein DPA
RefseqXP_024011885.10.0transcription factor-like protein DPA
RefseqXP_024011886.10.0transcription factor-like protein DPA
RefseqXP_024011887.10.0transcription factor-like protein DPA
SwissprotQ9FNY30.0DPA_ARATH; Transcription factor-like protein DPA
TrEMBLV4L9410.0V4L941_EUTSA; Uncharacterized protein
STRINGXP_006398706.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-180Transcription factor DP