PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10014346m

Common Name

EUTSA_v10014346mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

NF-YA

Protein Properties

Length: 278aa MW: 30801.6 Da PI: 9.782

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10014346m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	90.6	2e-28	139	194	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+ ++ + +++rkpy+h+SRh hA+rRpRgsgGrF Thhalv10014346m 139 GTIYVNSKQYHGIIRRRQSRAKAVLKNEM-SRCRKPYMHHSRHLHAMRRPRGSGGRF 194 689********************9999.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.1E-31	136	197	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.657	137	197	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.7E-21	140	162	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.1E-25	140	194	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.7E-21	171	194	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MQTDYCKEKE GFLSPPHNYW WNAFGSPPLT AESHAGDASD SFSGVKVATP ETEQGVDKQR 60 SATLFTSSPG GGNRSRDVSK PQVAFTMQTA SFEFGFAQPK IYTKHPHVEQ YYGVVSAYGS 120 QMLPGRVMLP LKMETEEDGT IYVNSKQYHG IIRRRQSRAK AVLKNEMSRC RKPYMHHSRH 180 LHAMRRPRGS GGRFLNTKKD DAAKKTKPSY SQNSETLHPE NGTMNSSREA NGPNFSGSEV 240 TSMDYFLSSS VHSLGGMVMP NKWIAAAMDI GCCNLKT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-15	141	202	5	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10014346m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399124.1	0.0	nuclear transcription factor Y subunit A-10 isoform X1
Refseq	XP_024011163.1	0.0	nuclear transcription factor Y subunit A-10 isoform X1
Swissprot	Q8LFU0	1e-149	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	V4LDW7	0.0	V4LDW7_EUTSA; Uncharacterized protein
STRING	XP_006399124.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	1e-145	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Thhalv10014346m
Entrez Gene	18017200

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]