PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014348m
Common NameEUTSA_v10014348mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 278aa    MW: 29956.5 Da    PI: 7.8269
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014348mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017111133123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+ksF +   L  H  +H
  Thhalv10014348m 111 YQCKTCDKSFHSFQALGGHRASH 133
                      9*********9988888887776 PP
2zf-C2H211.60.00088185207123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+  Fs+   L  H+r+H
  Thhalv10014348m 185 HECSICKAEFSSGQALGGHMRRH 207
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-9110133No hitNo description
PfamPF139126.0E-12110135IPR007087Zinc finger, C2H2
SMARTSM003550.041111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-9180207No hitNo description
Gene3DG3DSA:3.30.160.605.2E-4182209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12184209IPR007087Zinc finger, C2H2
SMARTSM003550.031185207IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328185212IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTSVHEETRQ VLLIKGKRTK RQRSASPFTN AEAVSGVCSG ERSSEAREQE AGEVEYQGAT  60
DEDEDMANCL MLLSQGHKAK SSGDHLSTQK MGFLSYKKLV SSLEIGPDGV YQCKTCDKSF  120
HSFQALGGHR ASHKKPKLGT SVLKCDEQRT ASASAVETVE GGIVGTFLSL QVTSSNSSKK  180
PEKTHECSIC KAEFSSGQAL GGHMRRHRGL TVNANAASPN KTATSSSHHQ ESIRPKNFLE  240
LDLNLPAPED EAKFAFASKD QMLLYAAAAN SLIDCHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014348m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937340.0AB493734.1 Arabidopsis thaliana At5g03510 mRNA for hypothetical protein, partial cds, clone: RAAt5g03510.
GenBankAK1765940.0AK176594.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-12-D04.
GenBankAL1627510.0AL162751.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398801.10.0zinc finger protein ZAT5
TrEMBLV4L9C20.0V4L9C2_EUTSA; Uncharacterized protein
STRINGXP_006398801.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-155C2H2 family protein