PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014370m
Common NameEUTSA_v10014370mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 274aa    MW: 31142.9 Da    PI: 6.9629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014370mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-073069340
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40
                     +WT+eE +++ +a + +  +   +W ++a++++ g+t  ++
  Thhalv10014370m 30 SWTKEENKKFERALAVYADDtpdRWFKVAAMIP-GKTISDV 69
                     7*****************99*************.***9887 PP
2Myb_DNA-binding41.53e-13133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
  Thhalv10014370m 133 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVGTKTPTQVASHAQKY 177
                      8****************************99*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.312679IPR017884SANT domain
SMARTSM007171.1E-52779IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-112983IPR009057Homeodomain-like
CDDcd001675.57E-63070No hitNo description
PfamPF002495.2E-63070IPR001005SANT/Myb domain
PROSITE profilePS5129418.68126182IPR017930Myb domain
SuperFamilySSF466894.45E-16128181IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-16130181IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.0E-11130182IPR009057Homeodomain-like
SMARTSM007175.7E-11130180IPR001005SANT/Myb domain
PfamPF002498.8E-11133177IPR001005SANT/Myb domain
CDDcd001674.34E-10133177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
METLHPLLSH VPTSSHQFVV QEMMSLQSSS WTKEENKKFE RALAVYADDT PDRWFKVAAM  60
IPGKTISDVM WQYSKLEEDL FDIEAGLVPI PGYPSATPCG FDQLVSPRDF DLYHKRPNNG  120
ARGFDQERRK GVPWTEEEHR RFLLGLLKYG KGDWRNISRN FVGTKTPTQV ASHAQKYYQR  180
QLSNAKDKRR PSIHDITTVN LLNNNPSRPL SDHDSFLQQP PEAKQGFTDR DNAEEGVMFL  240
GKNLSSVLSP YDPAVKFAGE NVYDDGAYCI TRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-152393173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014370m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399038.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-71DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4N5020.0V4N502_EUTSA; Uncharacterized protein
STRINGXP_006399038.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-173MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]