PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014454m
Common NameEUTSA_v10014454mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-YC
Protein Properties Length: 258aa    MW: 28928.3 Da    PI: 5.171
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014454mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.66e-186861898
            NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     ++++P +rik+i+++dedv +i+  +P l+ska elf+ +l   +++ + +   +t++   ++++v+  ++fdfl +iv +
  Thhalv10014454m  6 QTRFPATRIKRIMQTDEDVGKIAMAVPLLVSKALELFLQDLCNHTYNVTLSRGAKTVNSVHLKQCVQAFNVFDFLREIVDK 86
                     789************************************************************************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-25272IPR009072Histone-fold
PfamPF008081.7E-17871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.49E-191888IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MKKKLQTRFP ATRIKRIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCNHT YNVTLSRGAK  60
TVNSVHLKQC VQAFNVFDFL REIVDKVPDL GGSEAEDCSA TKRRKVFDGS ICNDEDMKAT  120
QMDEVKHSGG GRGRRGRGRG RGRGRTGNGL SLEFEDDLGD VSPERSRSIS PENGSLSHDD  180
VSWKKDLKPK NELKVRNFDL NVGLDENGEE TDTSLERRLE GRRPGWPLFG IKEMKIDHDQ  240
EASANEEDYD EESIDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134143RGRGRGRGRG
2134144RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014454m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400509.10.0dr1-associated corepressor
TrEMBLV4LHQ80.0V4LHQ8_EUTSA; Uncharacterized protein
STRINGXP_006400509.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139682124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.11e-109NF-YC family protein