PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014457m
Common NameEUTSA_v10014457mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WOX
Protein Properties Length: 257aa    MW: 28839 Da    PI: 9.8101
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014457mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.2e-201372357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++tkeq++ Le+l+++  r+psa+++++++ +l    +++ ++V++WFqN++a++++
  Thhalv10014457m 13 SRWNPTKEQITLLENLYKQgIRTPSADQIQQITGRLraygHIEGKNVFYWFQNHKARQRQ 72
                     8*****************99**************************************97 PP
2Wus_type_Homeobox115.91.8e-371174265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +++RW+Pt+eQi++Le+lyk+G+rtP++++iq+it +L++yG+ie+kNVfyWFQN+kaR+rqkq
    Thhalv10014457m 11 SSSRWNPTKEQITLLENLYKQGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQKQ 74
                       689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-12579IPR009057Homeodomain-like
PROSITE profilePS5007110.9873IPR001356Homeobox domain
SMARTSM003893.3E-51077IPR001356Homeobox domain
PfamPF000464.4E-181372IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-81372IPR009057Homeodomain-like
CDDcd000865.54E-61474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MENEGNAGTA SSSRWNPTKE QITLLENLYK QGIRTPSADQ IQQITGRLRA YGHIEGKNVF  60
YWFQNHKARQ RQKQKQERIA YFNRLLHKTS RFFHPPPCSN VGCVSPYYLQ QVSDHHNRHG  120
SVYRQDLIHS NNVMIPSGGY EKRTITDHKK QLSDITTTAT RMSMSSSSLR FDRFALHDNG  180
YHGEGITVNS HGRKTLPLFP LQPLDATNAD GVGNSSCAPD HDSPVAFLSD GGGREQPFID  240
FFSSGSGRFD KRGNGL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014457m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400972.10.0WUSCHEL-related homeobox 2
SwissprotQ6X7K11e-156WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLV4KWP60.0V4KWP6_EUTSA; Uncharacterized protein
STRINGXP_006400972.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-147WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]