PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10014467m

Common Name

EUTSA_v10014467mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

TCP

Protein Properties

Length: 255aa MW: 28541.8 Da PI: 8.6735

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10014467m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.2	1.5e-30	41	129	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa............seceaesssssasn 84 g+kdrhsk++T +g+RdRR+Rlsa +a++++dLqd+LG+ ++sk i+WLl++ak+ ++ l+ ++++++ Thhalv10014467m 41 GGKDRHSKVCTVRGLRDRRIRLSAMTAIQVYDLQDRLGLSQPSKVIDWLLEAAKHDVDLLPPLQFIPSlsagagksfpgiF------------- 121 79*************************************************************888883333333222221............. PP TCP 85 sssg......k 89 + + Thhalv10014467m 122 ---EsfdlgsS 129 ...02222221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-27	42	125	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.495	42	100	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSLTSREDMG IKQEDNDHTQ ATSLSWLRQN PRIVRVSRKF GGKDRHSKVC TVRGLRDRRI 60 RLSAMTAIQV YDLQDRLGLS QPSKVIDWLL EAAKHDVDLL PPLQFIPSLS AGAGKSFPGI 120 FESFDLGSSS LRTDTTQRES LDLERSKLVK FDESSNLDHR FFSNSRQSNK LCFPTLSAYN 180 SSSSSYHYNN LGHIQQYSLL DQSGNVTVTL SNNNDLNPQG METMSSIIPR YPSFLGGDQL 240 QLFSSNSNSS KQID*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-16	47	101	1	55	Putative transcription factor PCF6
5zkt_B	4e-16	47	101	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00497	DAP	Transfer from AT5G08070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10014467m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241004	7e-90	AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399294.1	0.0	transcription factor TCP17
Refseq	XP_024012319.1	0.0	transcription factor TCP17
Swissprot	Q9LEZ9	7e-95	TCP17_ARATH; Transcription factor TCP17
TrEMBL	V4LEA6	0.0	V4LEA6_EUTSA; Uncharacterized protein
STRING	XP_006399294.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	8e-88	TCP domain protein 17

Link Out ? help Back to Top
Phytozome	Thhalv10014467m
Entrez Gene	18018299

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]