PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014488m
Common NameEUTSA_v10014488mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 251aa    MW: 28685.1 Da    PI: 9.2076
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014488mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.2e-13231011296
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + + + +p +f  ++ ++k  +  +t+++  g+ W++ l  rk++++yvl +GWk  vk+ +L  gD++ F +dg+++f+++  +
  Thhalv10014488m  23 SGDDMEVPVSFN-RC-LPKCLPNNVTIKSIYGKIWKMAL--RKCGEKYVLVNGWKMIVKDEDLVGGDVLEFDFDGSQCFNFC--I 101
                      556677777776.44.34567789***************..*********************************99999544..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-1710104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.4212105IPR003340B3 DNA binding domain
CDDcd100171.24E-1212102No hitNo description
Gene3DG3DSA:2.40.330.101.1E-1512104IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-1314105IPR003340B3 DNA binding domain
PfamPF023629.2E-1216101IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-12145242IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-9146239IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.065151247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MNQGHNADYC LPKFFKVYLA GISGDDMEVP VSFNRCLPKC LPNNVTIKSI YGKIWKMALR  60
KCGEKYVLVN GWKMIVKDED LVGGDVLEFD FDGSQCFNFC IYEPRTMCKR LRRSSVRGEE  120
ETRANDDNDA TLEDVDVSDQ RQYLDDPNNP FFPVTLNPNR RSQLRIPRKV ITDYGLNFPE  180
NITLVDTLVK KFGKLAKKIK IQLNGSVFVK GYGAILRRNN VKSRDKLICE LKKTGSNNMV  240
HTIKFHVISE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014488m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400878.10.0B3 domain-containing protein At5g60130
SwissprotQ9LVG13e-52Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLV4N9890.0V4N989_EUTSA; Uncharacterized protein
STRINGXP_006400878.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.22e-98B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]