PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014506m
Common NameEUTSA_v10014506mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 247aa    MW: 27958.5 Da    PI: 4.5175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014506mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.6e-145699755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  Thhalv10014506m 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99
                     57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1774998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-125299No hitNo description
SMARTSM003534.1E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1755114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.1E-5162232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MESIEQEINN YWEPSSFLPN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY EETKLEAEIR ELESTPKSSL  120
SFSKDFDRDL LVPVTSKKMK QLDTGSSRSL IEVLDLKVTF MRERTMVVNV TCNKRTDTMV  180
KLCEVFESLN LKILTSSLTS FSGMIFNTLF IEADEEEQEM LRSKIETGIG AYNETHSPSL  240
SIDSHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1454108963Transcription factor MYC2
5gnj_B2e-1454108963Transcription factor MYC2
5gnj_E2e-1454108963Transcription factor MYC2
5gnj_F2e-1454108963Transcription factor MYC2
5gnj_G2e-1454108963Transcription factor MYC2
5gnj_I2e-1454108963Transcription factor MYC2
5gnj_M2e-1454108963Transcription factor MYC2
5gnj_N2e-1454108963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014506m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531760.0AK353176.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401237.10.0transcription factor bHLH35 isoform X2
SwissprotQ2HIV91e-162BH035_ARATH; Transcription factor bHLH35
TrEMBLV4KXF21e-180V4KXF2_EUTSA; Uncharacterized protein
STRINGXP_006401237.11e-180(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-149bHLH family protein