PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014666m
Common NameEUTSA_v10014666mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 212aa    MW: 23660.1 Da    PI: 4.8167
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014666mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-16109159255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Thhalv10014666m 109 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDVDAARAYDCAAFKLRG 159
                      7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.2E-31108168IPR001471AP2/ERF domain
SMARTSM003808.3E-36109173IPR001471AP2/ERF domain
PROSITE profilePS5103224.487109167IPR001471AP2/ERF domain
PfamPF008472.8E-11109159IPR001471AP2/ERF domain
CDDcd000187.52E-29109167No hitNo description
SuperFamilySSF541711.96E-22109168IPR016177DNA-binding domain
PRINTSPR003673.9E-13110121IPR001471AP2/ERF domain
PRINTSPR003673.9E-13149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MATFEESSDF DAIQKHLFED FMVSDGFMGD LDFDASFASG LWCIEPMMNQ VPKQEPDSPV  60
LDPDSFVKEF LQVEAESSTS TGISSSHETD QSVSTLKKAK RFEEQESRHY RGVRRRPWGK  120
FAAEIRDPAK KGSRIWLGTF ESDVDAARAY DCAAFKLRGR KAVLNFPLDA GKYEAPANSG  180
RKRKRSDIQE EPQRSQSNSS SSSSDGETTC E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-28108168161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014666m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507100.0AY350710.1 Brassica oleracea clone BAC Bo37N21, partial sequence.
GenBankHQ6139480.0HQ613948.1 Brassica napus ethylene response factor 50 (ERF50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399241.11e-155ethylene-responsive transcription factor ERF106
SwissprotQ9LY051e-109EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLV4LAM11e-154V4LAM1_EUTSA; Uncharacterized protein
STRINGXP_006399241.11e-155(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-102ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]