PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10014694m

Common Name

EUTSA_v10014694mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 207aa MW: 23225.5 Da PI: 8.3518

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10014694m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.2	3e-08	28	79	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr+ lP ++K ++ + Av++Ik+ q Thhalv10014694m 28 KLLHRNIERQRRQEMAILFASLRSQLPLqY---IKGKRAMSDHVNGAVNFIKDTQ 79 567999********************66...9999999*********9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.02E-11	23	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.46E-7	25	83	No hit	No description
PROSITE profile	PS50888	11.407	26	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-5	28	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-7	28	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDPCNIPKKT RHQSHMSHER DETTKEKKLL HRNIERQRRQ EMAILFASLR SQLPLQYIKG 60 KRAMSDHVNG AVNFIKDTQT RIKDLAARRD EMKREIAPIC SDPSSQTGSG SGSNRSDPAS 120 VMVQTCVSGI EVVVNSSVSG LEAWPLSRVL EVLHEQGLEV ISSLTARVNE RLMHTIQVEV 180 NSFVCFDLAW LQQKLIEELA LSTTGY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10014694m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006401909.2	1e-152	transcription factor bHLH120
Swissprot	Q9FLI0	1e-115	BH120_ARATH; Transcription factor bHLH120
TrEMBL	V4LLM0	1e-152	V4LLM0_EUTSA; Uncharacterized protein
STRING	XP_006401909.1	1e-152	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-118	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10014694m
Entrez Gene	18018206

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]