PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014700m
Common NameEUTSA_v10014700mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 206aa    MW: 23630.1 Da    PI: 7.2849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014700mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.17.2e-23114174259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+ WrKYGqK++k+s + rsYY+C+++   +C++kk+v+  +++p +  +tY g+H+++
  Thhalv10014700m 114 HDGFLWRKYGQKQIKESGHQRSYYKCAYTkdqNCEAKKQVQMIQHNPPLYSTTYFGHHTCQ 174
                      6**************************988899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-23106174IPR003657WRKY domain
PROSITE profilePS5081119.313108176IPR003657WRKY domain
SuperFamilySSF1182905.36E-23110175IPR003657WRKY domain
SMARTSM007742.5E-33113175IPR003657WRKY domain
PfamPF031068.8E-23115174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKSCQQKAME TLLHGHGCAN QLKLIMDQAQ SDTSMEREDL AKSVLHCFSD ALSILIDTND  60
HHHHQDDQSN NSSPQDSSPV LESGRKSLNK RGRKTSMAES SDYRRHESPN PIYHDGFLWR  120
KYGQKQIKES GHQRSYYKCA YTKDQNCEAK KQVQMIQHNP PLYSTTYFGH HTCQLHQAYA  180
TFPIDESDPQ DSHMIRFDHP NSSTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-141151741069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014700m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937300.0AB493730.1 Arabidopsis thaliana At5g01900 mRNA for hypothetical protein, partial cds, clone: RAAt5g01900.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012297.11e-147probable WRKY transcription factor 62
SwissprotQ9LZV61e-124WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLV4LJR51e-153V4LJR5_EUTSA; Uncharacterized protein
STRINGXP_006398565.11e-154(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-110WRKY DNA-binding protein 62