PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014754m
Common NameEUTSA_v10014754mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 192aa    MW: 22022 Da    PI: 9.6845
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014754mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.7e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd +l+ +++ +G g+W+ I+r+ g++R +k+c++rw +yl
  Thhalv10014754m 11 RGLWKPEEDMILKSYIETHGEGNWADISRRSGLKRGGKSCRLRWKNYL 58
                     788*****************************99************97 PP
2Myb_DNA-binding50.45.2e-1664109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  Thhalv10014754m  64 RGGMSPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 109
                      6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.794658IPR017930Myb domain
SuperFamilySSF466897.49E-299105IPR009057Homeodomain-like
SMARTSM007175.5E-141060IPR001005SANT/Myb domain
PfamPF002495.4E-141158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-221265IPR009057Homeodomain-like
CDDcd001671.39E-101458No hitNo description
PROSITE profilePS5129424.58459113IPR017930Myb domain
SMARTSM007172.2E-1563111IPR001005SANT/Myb domain
PfamPF002491.7E-1464109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2366112IPR009057Homeodomain-like
CDDcd001673.20E-1167109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEKEGKSHVK RGLWKPEEDM ILKSYIETHG EGNWADISRR SGLKRGGKSC RLRWKNYLRP  60
NIKRGGMSPQ EQDLIIRMHK LLGNRWSLIA GRLPGRTDNE VKNYWNTHLN KKSSSRKQNA  120
PESVEATPFI DKPVMSTEEV RRSHGEGGEG EEEVDTTWMN RIGSPLPLIT HYPDTLVFDP  180
CFAFTDFFPL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-23911225127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014754m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196371e-143AY519637.1 Arabidopsis thaliana MYB transcription factor (At5g52600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401804.11e-141transcription factor MYB82
SwissprotQ9LTF71e-114MYB82_ARATH; Transcription factor MYB82
TrEMBLV4LLA91e-140V4LLA9_EUTSA; Uncharacterized protein
STRINGXP_006401804.11e-140(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-111myb domain protein 82