PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014770m
Common NameEUTSA_v10014770mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 189aa    MW: 22331 Da    PI: 4.6297
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014770mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.22.9e-31171381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF+P de+lv eyL+kkv ++++++   ++e++ ++v+PwdL     +++ke+y+F+k+++++    rk r t sgyW++  +++ + s
  Thhalv10014770m  17 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GEKNKEVYYFVKKEERE----RKGRETLSGYWEECEEEELMES 101
                      79*************************999..49*************6...56789*******99875....899*********9887655555 PP

              NAM  95 k...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++l g +kt++fy g++p+g+ t W+m e+rl
  Thhalv10014770m 102 GdhdCNHLEGRRKTFAFYIGKRPRGTITPWIMYEFRL 138
                      46656667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-346162IPR003441NAC domain
PROSITE profilePS5100533.80217162IPR003441NAC domain
PfamPF023658.7E-1918138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDISTQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE LRSCNVDPWD  60
LLGEKNKEVY YFVKKEERER KGRETLSGYW EECEEEELME SGDHDCNHLE GRRKTFAFYI  120
GKRPRGTITP WIMYEFRLLS SRATRLPRGE VGKWRAVKIV VKEDNEEEIE EDEHASDESD  180
GEEVVQSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-181513915143NO APICAL MERISTEM PROTEIN
1ut4_B1e-181513915143NO APICAL MERISTEM PROTEIN
1ut7_A1e-181513915143NO APICAL MERISTEM PROTEIN
1ut7_B1e-181513915143NO APICAL MERISTEM PROTEIN
4dul_A1e-181513915143NAC domain-containing protein 19
4dul_B1e-181513915143NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014770m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0151501e-173BT015150.1 Arabidopsis thaliana At5g50820 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402058.11e-137NAC domain-containing protein 41
TrEMBLV4NC571e-135V4NC57_EUTSA; Uncharacterized protein
STRINGXP_006402058.11e-136(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.15e-95NAC domain containing protein 97