PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014889m
Common NameEUTSA_v10014889mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 162aa    MW: 19281.3 Da    PI: 8.3
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014889mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.45.5e-101513710128
              NAM  10 tdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kg 97 
                      +de++v +yL++kv g+ + + ++i ev  ++y+ ePw Lp++++   + +ew++  ++  +      + + +  +g W a      +lsk +g
  Thhalv10014889m  15 SDEDIVECYLRPKVMGEATAMPRFIVEVgeELYTREPWLLPQQTDPilNPREWFYLGPKWVR------PFQgVYFDGSWDAIEGFFVILSKeTG 102
                      79****************9998999999778**********644434466799888776554......33336779*****9999999988788 PP

              NAM  98 elvglkktLvfy..kgrapkge..ktdWvmheyrl 128
                      e++g+ +   +y  ++++ kg    ++W+m ey l
  Thhalv10014889m 103 EKIGVTRRYRLYcrNKNDDKGLmlPSEWFMREYLL 137
                      89999999999954333444434579*******75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.4596153IPR003441NAC domain
PfamPF023654.5E-713136IPR003441NAC domain
SuperFamilySSF1019411.44E-1815152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MISFASTEEL RCRISDEDIV ECYLRPKVMG EATAMPRFIV EVGEELYTRE PWLLPQQTDP  60
ILNPREWFYL GPKWVRPFQG VYFDGSWDAI EGFFVILSKE TGEKIGVTRR YRLYCRNKND  120
DKGLMLPSEW FMREYLLYHP KFHSHALCKV TYNRPRPRRS M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014889m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400631.11e-118NAC domain-containing protein 5
TrEMBLV4LEH11e-117V4LEH1_EUTSA; Uncharacterized protein
STRINGXP_006400631.11e-118(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.19e-51NAC domain containing protein 27