PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10014905m

Common Name

EUTSA_v10014905mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HD-ZIP

Protein Properties

Length: 157aa MW: 17944.3 Da PI: 7.969

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10014905m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	9	64	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t+eq+++Le++F n+++ + + eL++ lgL++rqV vWFqN+Ra+ k Thhalv10014905m 9 RNKKKRLTQEQVRQLEKCFTLNKKLEPDLKLELSNMLGLPQRQVAVWFQNKRARSK 64 567889************************************************99 PP
2	HD-ZIP_I/II	99.5	3.1e-32	10	102	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl++eqv++LE++F+ ++kLep+ K el++ Lgl +rqvavWFqn+RAR kt+ lE ++ L+++++a +++++Le++v+ L++elk+ Thhalv10014905m 10 NKKKRLTQEQVRQLEKCFTLNKKLEPDLKLELSNMLGLPQRQVAVWFQNKRARSKTQSLELQHCNLQSKLEAALSDKAKLEHQVQYLQDELKR 102 59****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-18	5	67	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.2	6	66	IPR001356	Homeobox domain
SMART	SM00389	2.2E-17	8	70	IPR001356	Homeobox domain
Pfam	PF00046	7.5E-16	9	64	IPR001356	Homeobox domain
CDD	cd00086	1.44E-14	9	67	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-17	12	69	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	41	64	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MENSLSQSRN KKKRLTQEQV RQLEKCFTLN KKLEPDLKLE LSNMLGLPQR QVAVWFQNKR 60 ARSKTQSLEL QHCNLQSKLE AALSDKAKLE HQVQYLQDEL KRARNQLALF TNQDSPVENS 120 NLGSCEESHD DQVVVFDELY ACLMSNGHGS SPTSWV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10014905m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006401637.1	1e-111	homeobox-leucine zipper protein ATHB-52
Swissprot	Q9FN29	1e-100	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	V4KYP4	1e-110	V4KYP4_EUTSA; Uncharacterized protein
STRING	XP_006401637.1	1e-111	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-102	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Thhalv10014905m
Entrez Gene	18017577