PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014972m
Common NameEUTSA_v10014972mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 141aa    MW: 16097.3 Da    PI: 5.245
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014972mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15.2e-211198194
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     ffk +   +v++s  +++p +f+e+ + +   +kt +l+ + g +W+v++  ++ ++r ++t+GW++F+++++Lk+g+ ++F +dg+ +fe  v
  Thhalv10014972m 11 FFKFF--LSVTTSESMSIPTTFTEHLKDP--LPKTAKLQGTGGGTWTVNF--SRIRERAYITAGWSKFAEEHELKDGEYLTFVYDGECTFEVSV 98
                     78888..89999999********655544..999****************..**********************************99995555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-239104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.699102IPR003340B3 DNA binding domain
CDDcd100173.17E-19999No hitNo description
Gene3DG3DSA:2.40.330.101.0E-219101IPR015300DNA-binding pseudobarrel domain
PfamPF023628.7E-181198IPR003340B3 DNA binding domain
SMARTSM010197.6E-2111102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MADNEVVLPR FFKFFLSVTT SESMSIPTTF TEHLKDPLPK TAKLQGTGGG TWTVNFSRIR  60
ERAYITAGWS KFAEEHELKD GEYLTFVYDG ECTFEVSVYG RWGCKETRAV MQWSSFLILM  120
KKILQWPDAS GESVFSEYFT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-2011043104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014972m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401912.27e-94B3 domain-containing protein REM20 isoform X2
SwissprotQ8LAV56e-43REM20_ARATH; B3 domain-containing protein REM20
TrEMBLV4NBR21e-99V4NBR2_EUTSA; Uncharacterized protein
STRINGXP_006401913.11e-100(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-45B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]