PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015280m
Common NameEUTSA_v10015280mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 154aa    MW: 17708 Da    PI: 7.0585
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015280mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.73.2e-211013610128
              NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka...eekewyfFskrdkkya...tgkrknra....tksgyWkatgkdkev 92 
                      +d+e v +  ++kv+++++++ e  ++ diy++ePw L  ++  +   e+ke+ +F+kr ++ +   tgk+k+r+    t +gyWkatgk k++
  Thhalv10015280m  10 EDQEDVGFRFQPKVAKQPNHELELEDKDDIYDIEPWLLThTE--TdffESKELVYFVKRITQVSgkeTGKQKKRQvgekTCQGYWKATGKPKDI 101
                      588888888999******8887877777**********8322..2345778999999988776655578888886566677************* PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s+ +g ++g k++L fy + ++  + + W+m ey+l
  Thhalv10015280m 102 VSEeTGVVIGRKRSLSFYVKGEK--KASGWTMVEYSL 136
                      *9867788**********44443..479*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.7281153IPR003441NAC domain
SuperFamilySSF1019414.71E-2214148IPR003441NAC domain
PfamPF023652.2E-1115136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MSMVEKHYTE DQEDVGFRFQ PKVAKQPNHE LELEDKDDIY DIEPWLLTHT ETDFFESKEL  60
VYFVKRITQV SGKETGKQKK RQVGEKTCQG YWKATGKPKD IVSEETGVVI GRKRSLSFYV  120
KGEKKASGWT MVEYSLHDGG SFQNQVLCQH KAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015280m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012354.17e-95protein CUP-SHAPED COTYLEDON 2
TrEMBLV4N8221e-109V4N822_EUTSA; Uncharacterized protein
STRINGXP_006400378.11e-110(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.16e-32NAC domain containing protein 88