PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10015305m

Common Name

EUTSA_v10015305mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

C2H2

Protein Properties

Length: 183aa MW: 20140.2 Da PI: 6.7812

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10015305m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C++s++ L H++ H Thhalv10015305m 20 FKCKYCPRSYPKTQALSGHQNAH 42 89******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.26E-6	17	47	No hit	No description
PROSITE profile	PS50157	11.344	20	47	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	22	42	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MSSWDSRSAS DVSDDGSATF KCKYCPRSYP KTQALSGHQN AHRREREITE RQQRAILAHV 60 NQPDPNPYPN PYVFPIHNAL TPGFEQPLCN VNKPDSLAVG YNQRTRSSSS DHARLQIHTS 120 QGLDRGWTIT ENPYQPLLSA PSPVSLDLCL GVGSSSQAQT RPKEPNDALA ANQEDDDLSL 180 KL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10015305m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006398971.1	1e-134	uncharacterized protein LOC18018075
TrEMBL	V4L9R9	1e-132	V4L9R9_EUTSA; Uncharacterized protein
STRING	XP_006398971.1	1e-133	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15741	13	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	1e-36	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thhalv10015305m
Entrez Gene	18018075