PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10015321m

Common Name

EUTSA_v10015321mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 234aa MW: 27168.1 Da PI: 9.1076

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10015321m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.8	7e-26	120	170	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++k+F+ pi +AAkeL+v+lTvLK++CR +GI RWPhRk+ksl Thhalv10015321m 120 QDKLELSEIRKFFDRPIMKAAKELNVGLTVLKKRCRDLGIYRWPHRKLKSL 170 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.507	107	191	IPR003035	RWP-RK domain
Pfam	PF02042	7.1E-21	123	170	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MDPNSVLPLV SMKMENKNDP DSFYDMLDKL PPLESLLETD DLKLDAAFHF QFQFNDFGNF 60 FENIEVNNTI SSDVLMLTQE PYISNDSSSP VAVQNKDCLS STERCEKRTR RKRNSRTKRQ 120 DKLELSEIRK FFDRPIMKAA KELNVGLTVL KKRCRDLGIY RWPHRKLKSL NSLIKNLKGV 180 GMEEEVKNLE EHRVHIEQEP DAELTVGTKK LRQACFKANY KRRKSLAANG DYY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10015321m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006401753.2	1e-173	LOW QUALITY PROTEIN: protein RKD4
Swissprot	Q9LVU8	1e-107	RKD4_ARATH; Protein RKD4
TrEMBL	V4NBC6	1e-172	V4NBC6_EUTSA; Uncharacterized protein
STRING	XP_006401753.1	1e-173	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-85	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Thhalv10015321m
Entrez Gene	18017060

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]