PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015323m
Common NameEUTSA_v10015323mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-YC
Protein Properties Length: 204aa    MW: 22637.6 Da    PI: 4.7223
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015323mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC170.52e-53381362100
            NF-YC   2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                      lk+fw +q+e+++dfk h+lPlarikki+k+d dv+misaeaP++++kace+fi++lt+rswlhaeenkrrtl+k di+aav+r + +dfl+d+
  Thhalv10015323m  38 LKNFWLQQMESVEDFKIHQLPLARIKKIMKSDSDVRMISAEAPIVFAKACEMFIVDLTMRSWLHAEENKRRTLQKPDISAAVARNFAYDFLIDV 131
                      9********************************************************************************************* PP

            NF-YC  96 vprde 100
                      vprde
  Thhalv10015323m 132 VPRDE 136
                      ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.7E-2914128IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.0E-3447119IPR009072Histone-fold
PfamPF008083.5E-2056119IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MENNNHQPPP QPSQPPMYSQ PPHTAAFNPV LQQQNQALKN FWLQQMESVE DFKIHQLPLA  60
RIKKIMKSDS DVRMISAEAP IVFAKACEMF IVDLTMRSWL HAEENKRRTL QKPDISAAVA  120
RNFAYDFLID VVPRDESLAA VDPDFVAVPH PDGGGVPYYY PPVIDGSGMY APYPGQSWPV  180
SWPAVSGDGE EETVQCGENS GGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-4443134495NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015323m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402087.11e-151nuclear transcription factor Y subunit C-6
SwissprotQ9FGP72e-78NFYC6_ARATH; Nuclear transcription factor Y subunit C-6
TrEMBLV4KZY01e-149V4KZY0_EUTSA; Uncharacterized protein
STRINGXP_006402087.11e-150(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50480.18e-65nuclear factor Y, subunit C6
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]