PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015349m
Common NameEUTSA_v10015349mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 196aa    MW: 22816.8 Da    PI: 8.0312
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015349mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.31.2e-26111454128
              NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka..eekewyfFskrdkkya....tgkrknr.atk.....sgyW 83 
                      G+ F+P+d+e++++yL++k++g++ +  ++i + d+y  ePw L++     +   e+ewy+F++r + ++    +gk+++r +t       g W
  Thhalv10015349m  11 GIFFDPSDKEIIDYYLARKLRGETSKN-DFILDKDVYAKEPWLLDHtdY--SffMEDEWYYFTTRTQISEkklgRGKNSKRrITGgdndgCGSW 101
                      888*********************888.99**************84232..234678******998766533445555555365566656799* PP

              NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k   +d  + +++++ +g+kktL+f k ++ k + ++W+m ey l
  Thhalv10015349m 102 KPNTTDDIIDKETTKIIGTKKTLTFTKSKKTK-NDSSWIMTEYML 145
                      ***9999999999999**********777666.89********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.5428163IPR003441NAC domain
SuperFamilySSF1019418.24E-3110161IPR003441NAC domain
PfamPF023658.9E-1811144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MISSYCKEDG GIFFDPSDKE IIDYYLARKL RGETSKNDFI LDKDVYAKEP WLLDHTDYSF  60
FMEDEWYYFT TRTQISEKKL GRGKNSKRRI TGGDNDGCGS WKPNTTDDII DKETTKIIGT  120
KKTLTFTKSK KTKNDSSWIM TEYMLPEEDD KFQELVLCKI HKIDKSKKKK DDLHGPSEEG  180
NMKVMDAGSR RRRLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-181116920171NO APICAL MERISTEM PROTEIN
1ut4_B3e-181116920171NO APICAL MERISTEM PROTEIN
1ut7_A3e-181116920171NO APICAL MERISTEM PROTEIN
1ut7_B3e-181116920171NO APICAL MERISTEM PROTEIN
4dul_A3e-181116920171NAC domain-containing protein 19
4dul_B3e-181116920171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015349m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012566.11e-124NAC domain-containing protein 35
TrEMBLV4LFF01e-139V4LFF0_EUTSA; Uncharacterized protein
STRINGXP_006401011.11e-140(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.14e-11NAC domain containing protein 88