PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015354m
Common NameEUTSA_v10015354mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family AP2
Protein Properties Length: 578aa    MW: 63558.3 Da    PI: 6.2006
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015354mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-11217273155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++  g++ k  + g ++ +e+Aa+a++ a++k++g
  Thhalv10015354m 217 SIYRGVTRHRWTGRYEAHLWDnSCKrEGQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 273
                      57*******************88885445536655.779999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-9217273IPR001471AP2/ERF domain
CDDcd000189.82E-19217281No hitNo description
SuperFamilySSF541711.37E-14217282IPR016177DNA-binding domain
SMARTSM003807.7E-22218287IPR001471AP2/ERF domain
PROSITE profilePS5103217.319218281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-12218281IPR001471AP2/ERF domain
PRINTSPR003674.0E-6219230IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-11316366IPR016177DNA-binding domain
CDDcd000182.36E-16316365No hitNo description
SMARTSM003803.5E-21317371IPR001471AP2/ERF domain
PROSITE profilePS5103212.51317365IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-7317365IPR001471AP2/ERF domain
PRINTSPR003674.0E-6347367IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
YLLNFSANSM NNNWLGFSLS PYDQNHHRAD VDSSTTTTAV DVVGEYCYDL ATASDESSAV  60
QTSFSSPFGV VLDAFTRDNN SHSRDWDNNG AACNNIHSND QNGPKLENFL GRTTKIYNTN  120
DNGGDGSGGC GGGDGGGGGS LGMSMIKTWL RNNPVANVEH QDNGNGARGL SLSMNSSTTC  180
DGNNYTNNEV VVQEKTVVDV VEATPKKSIE SFGQRTSIYR GVTRHRWTGR YEAHLWDNSC  240
KREGQTRKGR QGGYDKEEKA ARAYDLAALK YWGTTTTTNF PMCDYEKEVE EMKHMTRQEY  300
VASLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGT QEEAAEAYDI AAIKFRGLSA  360
VTNFDMNRYN VKAILDSPSL PIGSAAKRLR DVNNPVPSMM VSSNLLESEK VSSYWQNAAL  420
QHHQGMDLSL LQQHQERYNG YYNGGNLSSE NARACFKQEE DQQHLLSNSP ISLMTQIDHH  480
SPASDDSVTV CGNSNIGYGG YHQGFAIPVN CDAYVAAEIA YNARNHYYFA QQQQQIQQQS  540
PEGDFPVAIS NNVGSNMFFN GEGGGEGAST FTVWNDT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126139SGGCGGGDGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015354m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012144.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLV4LPG50.0V4LPG5_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006400280.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein