PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015522m
Common NameEUTSA_v10015522mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 340aa    MW: 38886.1 Da    PI: 7.1241
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015522mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05243266123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+Cp+C+ +F ++  +  Hi++ H
  Thhalv10015522m 243 YTCPKCNNVFDTSQKFAAHISSiH 266
                      9*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.515243271IPR007087Zinc finger, C2H2
PROSITE patternPS000280245266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSPIPNGLNS YGDSTMNLHG SNPIQMSSSF PDHDTRMVRS VFITSGHTNH HGLFSSSRHA  60
INCYQDLQHI SSSSSSGFNN SHVAYQMREN MVSNVVDYFP LNNNPHLSQV TITETITNGY  120
SAIVPTSNLV TIQNEYERAM NPNILSPSFY PPTFVDKQCE ILNPTPLNTI PPHENSVFPR  180
HLDLFSFSPR HQHDQHVPHR RPVKKRCKPT KYFEESFDGS DSEKDGEYDG KTHSLPYEKY  240
GPYTCPKCNN VFDTSQKFAA HISSIHYKNE TVEERAKRYN ARNKKRFRKT NQMIHGESQM  300
IQTEDRVVEE SRGYNNIVSD IEAFQHHPIV KEEPVHDFV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015522m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400809.10.0uncharacterized protein LOC18016575
TrEMBLV4LIK20.0V4LIK2_EUTSA; Uncharacterized protein
STRINGXP_006400809.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.11e-128C2H2-like zinc finger protein