PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015598m
Common NameEUTSA_v10015598mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MIKC_MADS
Protein Properties Length: 148aa    MW: 16956.8 Da    PI: 10.6106
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015598mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.43.2e-221359551
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +rq +fskRr g+lKKA  LS+LC aevavi+fs++gkl+ +ss
  Thhalv10015598m 13 HAQRRQSSFSKRRSGLLKKARQLSTLCKAEVAVIVFSNSGKLFQFSS 59
                     6789*****************************************96 PP
2K-box21.97.4e-091161433764
            K-box  37 hllGedLesLslkeLqqLeqqLekslkk 64 
                      hl+G++L+ +s+k Lq+Le+qL+ +l +
  Thhalv10015598m 116 HLQGKKLNIMSMKVLQHLEHQLNAALIS 143
                      99***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.544161IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-19323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-23574IPR002100Transcription factor, MADS-box
PfamPF003191.0E-201357IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGLCKLVIKR LAHAQRRQSS FSKRRSGLLK KARQLSTLCK AEVAVIVFSN SGKLFQFSST  60
GMTQTLMRYE NYQLSTDAPL ITSKAAISHA YEISKLQERH WYGTYSPLCC QFHFPHLQGK  120
KLNIMSMKVL QHLEHQLNAA LISEKERN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-18172172MEF2 CHIMERA
6byy_B4e-18172172MEF2 CHIMERA
6byy_C4e-18172172MEF2 CHIMERA
6byy_D4e-18172172MEF2 CHIMERA
6bz1_A4e-18172172MEF2 CHIMERA
6bz1_B4e-18172172MEF2 CHIMERA
6bz1_C4e-18172172MEF2 CHIMERA
6bz1_D4e-18172172MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015598m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012193.13e-49agamous-like MADS-box protein AGL15 isoform X2
SwissprotQ392953e-44AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLV4NC981e-105V4NC98_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006402118.11e-106(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.14e-33AGAMOUS-like 15