PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015618m
Common NameEUTSA_v10015618mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ARR-B
Protein Properties Length: 134aa    MW: 15388.9 Da    PI: 8.47
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015618mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.59.4e-11781022751
          G2-like  27 AtPktilelmkvkgLtlehvkSHLQ 51 
                       +Pk+i +lm+v+gLt+++v+SHLQ
  Thhalv10015618m  78 SVPKKIQKLMNVEGLTRADVASHLQ 102
                      58*********************** PP
2Response_reg35.36.1e-13366163
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHH CS
     Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellk 63
                     vl vdD+p+ +e l+ ++   +y +v++++d+++ale+l+e+   +Dl++ D +mp+ d ++ll+
  Thhalv10015618m  3 VLAVDDNPTYLEKLKDLMLLCKY-HVTTTTDPKKALEMLRENFyiFDLVIADADMPDTDVFKLLE 66
                     799********************.***************999999***************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.11E-15176IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-14176No hitNo description
PROSITE profilePS5011017.6882118IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-8366IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.58E-10477No hitNo description
Gene3DG3DSA:1.10.10.601.6E-878103IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-879103IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MRVLAVDDNP TYLEKLKDLM LLCKYHVTTT TDPKKALEML RENFYIFDLV IADADMPDTD  60
VFKLLEIGLD MNLPVIISVP KKIQKLMNVE GLTRADVASH LQIRKDSTNK RKEENHVTLH  120
VPENGKRSKN RRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015618m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012587.11e-47two-component response regulator ARR18
SwissprotQ9FGT71e-25ARR18_ARATH; Two-component response regulator ARR18
TrEMBLV4LFU95e-92V4LFU9_EUTSA; Uncharacterized protein
STRINGXP_006401131.18e-93(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2719123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.15e-28response regulator 18