PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015634m
Common NameEUTSA_v10015634mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family EIL
Protein Properties Length: 402aa    MW: 45664.2 Da    PI: 4.7128
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015634mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3370.62.7e-1132025026258
                      XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3  26 edkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlil 119
                      ed+e + +  k +  ++ +rrkkm+raQD++LkYM+k+mevc+a+GfvYgi+pekgkp +g+sd Lr+WWke+v+fd+n+p+ai +y    l++
  Thhalv10015634m  20 EDEEISYDDLKRRMWKDPSRRKKMARAQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITGSSDGLRRWWKENVQFDQNAPNAIDDY--LTLAA 111
                      5666667888899999***********************************************************************..34555 PP

                      XXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHH CS
             EIN3 120 sgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtav 213
                      + ++  + e+ss  h+l+elqDTtlgSLLsal+qhc ppqrrfple+g++pPWWPtGkelwwge+g+++++g+ppy+kphdl+k wkvsvL+av
  Thhalv10015634m 112 AAAELIEKEPSSLLHMLQELQDTTLGSLLSALIQHCVPPQRRFPLEQGIAPPWWPTGKELWWGEQGAAHEHGAPPYRKPHDLRKSWKVSVLAAV 205
                      5555667799************************************************************************************ PP

                      HHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S- CS
             EIN3 214 ikhmsptieeirelerqskylqdkmsakesfallsvlnqeekeca 258
                      ikhmsp++ ++r+l+rqsk+lqdkm+ake++++++vlnqee++++
  Thhalv10015634m 206 IKHMSPNLGRVRRLARQSKCLQDKMMAKETDTWSRVLNQEEALLN 250
                      *****************************************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.5E-11127246No hitNo description
Gene3DG3DSA:1.10.3180.106.4E-67122250IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.16E-58125249IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVEVEELEPL SPIGDEGEEE DEEISYDDLK RRMWKDPSRR KKMARAQDSV LKYMMKIMEV  60
CKAKGFVYGI VPEKGKPITG SSDGLRRWWK ENVQFDQNAP NAIDDYLTLA AAAAELIEKE  120
PSSLLHMLQE LQDTTLGSLL SALIQHCVPP QRRFPLEQGI APPWWPTGKE LWWGEQGAAH  180
EHGAPPYRKP HDLRKSWKVS VLAAVIKHMS PNLGRVRRLA RQSKCLQDKM MAKETDTWSR  240
VLNQEEALLN IKDLKISEDQ ETSGSKRKGG FMEPSNSVYT CQNSSCPQSD VSFGFVDKNS  300
RTGHEIQCLY GSSAQEPSQS MVETISVLET APSIATNSTS EDDYSRMQHE LNFSRRFEDD  360
DDTAMDLNQF PESSQSDNVN QSNFSVWDMA CEDKDIYMYD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A7e-591262484126Protein ETHYLENE INSENSITIVE 3
4zds_B7e-591262484126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015634m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5433770.0FJ543377.1 Arabis alpina BAC clone PEP1_BAC, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012603.10.0LOW QUALITY PROTEIN: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX160.0EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLV4KSM40.0V4KSM4_EUTSA; Uncharacterized protein
STRINGXP_006399502.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]