PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015675m
Common NameEUTSA_v10015675mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 305aa    MW: 34339.8 Da    PI: 6.5081
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015675mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.82.2e-3345161199
                      EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                      f+k ltpsdv+k++rlv+pk++ae++                  + ++e+++ l++edesg+ W+++++y+++s++yvltkGW++Fvk+++L+ 
  Thhalv10015675m  45 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavivsssggadtssSTSTEKGMLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDP 138
                      99***********************************9999998667789******************************************** PP

                      T-EEEEEE-SSSEE..EEEEE-S CS
               B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                      gD+v F+++++++++l+++++r+
  Thhalv10015675m 139 GDVVFFQRQRSDSRRLFIGWRRR 161
                      *******99889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-4138171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-3040161IPR015300DNA-binding pseudobarrel domain
CDDcd100176.31E-2844152No hitNo description
PROSITE profilePS5086313.80345162IPR003340B3 DNA binding domain
SMARTSM010194.4E-2645162IPR003340B3 DNA binding domain
PfamPF023626.5E-3145161IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSVNHYSTDH HHHNTLLWQD RHATDTSEAT TATWLNDDQQ KESLFEKSLT PSDVGKLNRL  60
VIPKQHAEKY FPLNAVIVSS SGGADTSSST STEKGMLLSF EDESGKCWRF RYSYWNSSQS  120
YVLTKGWSRF VKDKQLDPGD VVFFQRQRSD SRRLFIGWRR RGQGSSTNSA VNTTSYASSM  180
AAPPYLQIHA SSNNYPNPPP HSEYSHYGAA VVTAAETHSI PSSSAVVGSS RTVRLFGVNL  240
ECQMDEDDDG DDSVTAAECP ADGYYGQYMH YYYTPHPHSM MKWETDEIII ETKVGPTKMM  300
VYRIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-49411614113B3 domain-containing transcription factor NGA1
5os9_B3e-49411614113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015675m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012344.10.0B3 domain-containing protein At5g06250 isoform X1
RefseqXP_024012345.10.0B3 domain-containing protein At5g06250 isoform X2
SwissprotQ9FNI31e-130Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLV4KRK10.0V4KRK1_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006399092.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-100B3 family protein