PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10015784m

Common Name

EUTSA_v10015784mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HD-ZIP

Protein Properties

Length: 208aa MW: 23899 Da PI: 7.5012

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10015784m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7.4e-20	67	121	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++t+eql Lee F+++ +++++++ +L+++lgL+ rq+ vWFqN+Ra++k Thhalv10015784m 67 KKKKRLTNEQLASLEESFQEDIKLDTDRKMKLSRELGLQPRQIAVWFQNHRARWK 121 67788*************************************************9 PP
2	HD-ZIP_I/II	116.7	1.4e-37	67	155	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq+++LEesF+e+ kL+++rK++l+reLglqprq+avWFqn+RAR+k ++lE+ y++L+++yda+++en++L++ev++Lr Thhalv10015784m 67 KKKKRLTNEQLASLEESFQEDIKLDTDRKMKLSRELGLQPRQIAVWFQNHRARWKVRHLEESYDSLRQEYDAVSRENQMLHDEVRKLRG 155 59*************************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.1E-18	54	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.601	63	123	IPR001356	Homeobox domain
SMART	SM00389	2.0E-17	65	127	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-17	67	121	IPR001356	Homeobox domain
CDD	cd00086	1.47E-16	67	121	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-19	69	131	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	98	121	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.9E-7	125	155	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MEWSTTSNVE NMRVAFMPPP WLESNSNLFH SLNYDPYAGN SSTPVLRQTG PVISVQCPSN 60 NDEMMVKKKK RLTNEQLASL EESFQEDIKL DTDRKMKLSR ELGLQPRQIA VWFQNHRARW 120 KVRHLEESYD SLRQEYDAVS RENQMLHDEV RKLRGIILKD HLMRCQSDQN SNQISGGSQI 180 YGVGQYSIPT FVASPCCPPI SHPPYPC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10015784m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006398837.1	1e-156	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	4e-86	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	V4KQT4	1e-155	V4KQT4_EUTSA; Uncharacterized protein
STRING	XP_006398837.1	1e-155	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	4e-88	homeobox 51

Link Out ? help Back to Top
Phytozome	Thhalv10015784m
Entrez Gene	18017927

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]