PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015892m
Common NameEUTSA_v10015892mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 349aa    MW: 38929.4 Da    PI: 8.4207
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015892mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.54.4e-35431951128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 
                      lp+G++F+Ptd+el+ e+L++kv++++        +           +i+   +i++++P++Lp  v+++  + +fF+k +++y+tg+rk+r+ 
  Thhalv10015892m  43 LPAGVKFDPTDQELI-EHLEAKVNANEenkkwsssH---PlidefipTIDGEdGICYTHPQKLP-GVTKDGLSKHFFHKPSRAYTTGTRKRRKi 131
                      799************.99*****9999666665551...044443333555545**********.555666799******************88 PP

              NAM  78 ............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   ++ +W++tgk+++v+  +g++ g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  Thhalv10015892m 132 iqtdhgsevtgsSSETRWHKTGKTRPVMI-NGRQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 195
                      9*999999987766889************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3835214IPR003441NAC domain
PROSITE profilePS5100532.00243214IPR003441NAC domain
PfamPF023651.2E-1544195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKNSKCNLID LKLEEHHHLC GSKHCPGCGR MIQAATKPNW VGLPAGVKFD PTDQELIEHL  60
EAKVNANEEN KKWSSSHPLI DEFIPTIDGE DGICYTHPQK LPGVTKDGLS KHFFHKPSRA  120
YTTGTRKRRK IIQTDHGSEV TGSSSETRWH KTGKTRPVMI NGRQRGCKKI LVLYTNFGKN  180
RRPEKTNWVM HQYHLGVNEE EREGELVVSK IFYQTQPRQC VGNNNWSDNH GSSKDLIGFG  240
AGDEISGVAA ALQSLGSGDV VSRVNTNPFT RAFNEGTAEA SKGREIRRVS GTCEEVHDGT  300
IKPSSSSSTS SHDMIHDHNN QHHQIGHIAS TSSYQHETFF NITSTVPFQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015892m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133921e-163AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026881e-163CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401302.20.0NAC domain-containing protein 75
SwissprotQ9M0F81e-115NAC75_ARATH; NAC domain-containing protein 75
TrEMBLV4KXM20.0V4KXM2_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006401302.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149281720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.10.0NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]