PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015895m
Common NameEUTSA_v10015895mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 244aa    MW: 26907.7 Da    PI: 4.7813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015895mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-1856106155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Thhalv10015895m  56 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 106
                      68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-1356106IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2157115IPR016177DNA-binding domain
PROSITE profilePS5103223.45957114IPR001471AP2/ERF domain
SMARTSM003805.3E-3757120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3257115IPR001471AP2/ERF domain
PRINTSPR003672.5E-105869IPR001471AP2/ERF domain
CDDcd000183.47E-3258116No hitNo description
PRINTSPR003672.5E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAASASESTF VEEYYNLRSE RVPQLSNSAS DSASHESKTE QNEKKTKRAR DSGKHPVYRG  60
VRMRNWGKWV SEIREPRKKS RIWLGTFPTP EMAARAHDVA ALSIKGSSAI LNFPELAESF  120
PRPVSLSPRD IQTAALKAAH MEPLTTSSFT SSSSSSSSST SSLESLVLVM DLSRTESEEL  180
DEIVELPSLG ASYDVDSANI GSDFVFSDSV DYCLYPPPWG QWSEENYGYG NITNFNQGLS  240
WDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18551141272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015895m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399666.11e-178dehydration-responsive element-binding protein 3
SwissprotQ9LYD31e-129DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLV4LBR61e-177V4LBR6_EUTSA; Uncharacterized protein
STRINGXP_006399666.11e-178(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-123ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]