PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015921m
Common NameEUTSA_v10015921mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 490aa    MW: 51940.1 Da    PI: 5.5821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015921mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05132152323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C++C+k+F++   L +H+ +H
  Thhalv10015921m 132 CNICNKRFPSANALFSHQISH 152
                      ******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.538130157IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSSSNSSSSS KPDQELKTIV ASSNSSSSSK PDQKLQTVVA SSNSSSSSKS DQELKTVIVA  60
VEEKQEYPLP VPEVVLEGKI TEVVPEGTIA EVVPEGTITE VVSERKNTER PSFGLGDARA  120
DPLPMENTLP LCNICNKRFP SANALFSHQI SHKVGQELEK IDGQGVWKTP YSQGTSGLVF  180
GGPSQGAPLS NDNIPYGIPL ESVGGARSSV ITTTFPSSNG RYTGGIIDMG MFMGYPVTPY  240
RSCTRDTSYN YLSSDATRCG LSLGPCKYGG GGSSRDYSSL FNGGDTSYNY HSSSDATRCG  300
ISLGPFKYGG GGSSRDYPSL FNGGIPMAHP TGPNHCFNVD PSHASLSREP LPSNRYRPHG  360
LSLSLTLGRP SDQEGSYSNN NSSYHGSLSL ELPPGECKFA GVTGGRTEDL NMPVRPHVSR  420
YQYKSCNPLD SITRNVPEAH PLPLPPSTNL SMDENVSGSS DPMEHSSAAE GKNKVGECED  480
HHEDSAGSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015921m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4NB000.0V4NB00_EUTSA; Uncharacterized protein
STRINGXP_006401583.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1875167