PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015968m
Common NameEUTSA_v10015968mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 403aa    MW: 45855.3 Da    PI: 8.1371
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015968mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-055982123
                     EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                     ++C+dCgk F+    L +H+   H
  Thhalv10015968m 59 FRCGDCGKGFRYEKCLSNHQEGmH 82
                     89*****************97666 PP
2zf-C2H210.90.0014295317123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+Fs+   L  H+  H
  Thhalv10015968m 295 HQCKLCNKVFSSYQALGGHQTFH 317
                      79************999999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0995982IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4485987IPR007087Zinc finger, C2H2
PROSITE patternPS0002806182IPR007087Zinc finger, C2H2
PfamPF139121.4E-8295317IPR007087Zinc finger, C2H2
SMARTSM003550.095295317IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45295322IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-8295317No hitNo description
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-8345372No hitNo description
PfamPF139121.8E-7349372IPR007087Zinc finger, C2H2
SMARTSM003552350372IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827350377IPR007087Zinc finger, C2H2
PROSITE patternPS000280352372IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEEERQNLHK PIYGVPRNHK NSQSQRDLSC YYGLRENPKK KTQESFGLES PELTKKILFR  60
CGDCGKGFRY EKCLSNHQEG MHLSTNQRAY EESIKSLCSS FGLVRKKKRS RVIRYKKTPL  120
SCSFTTFVES PSVFAANDEE LEVAECLILL SKSSPKFVVD GQKLVSEAMG ANPETRRCCL  180
SNKKPRKADE FKSGFSSNEQ NLMEERFSRY ERSKEPAEFE SGFSSDEQKL VQDEISSDET  240
SEEPASFLGE KSGLDQWKLQ KSCDFESGFY RTELGVGDME CSDSDTGSDK RNVEHQCKLC  300
NKVFSSYQAL GGHQTFHRMS KSKNKKNRRE ESVEEPEVES VTEKKEKKRH ECSICSRNFS  360
SVHALGGHKK CHGKRQQSKT EHEHEGLGLL SVVPGTDGIK FY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015968m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3911432e-44AL391143.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T20K14 (ESSA project).
GenBankCP0026882e-44CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ0566802e-44DQ056680.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g15480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400068.10.0zinc finger protein 485
TrEMBLV4N7C80.0V4N7C8_EUTSA; Uncharacterized protein
STRINGXP_006400068.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.11e-114C2H2 family protein