PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015971m
Common NameEUTSA_v10015971mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 122aa    MW: 13781.1 Da    PI: 8.4819
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015971mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.21.8e-4051041100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C+kdC++apyfp ++p+kfa++h+++Ga nv+k+l++lp ++r +a++sl++eA++r++dPvyG+vg+i+ lq ++++++  l
  Thhalv10015971m   5 RCAACKYLRRRCPKDCIFAPYFPPNDPEKFAYIHRIYGAGNVSKMLQQLPVQTRAEAVESLCFEAKCRVEDPVYGCVGIISLLQTEIQKTEILL 98 
                      6*****************************************************************************************9999 PP

           DUF260  95 allkee 100
                      a++++e
  Thhalv10015971m  99 AKTQAE 104
                      998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.824105IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-405102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MNPKRCAACK YLRRRCPKDC IFAPYFPPND PEKFAYIHRI YGAGNVSKML QQLPVQTRAE  60
AVESLCFEAK CRVEDPVYGC VGIISLLQTE IQKTEILLAK TQAEIVVAQI KHSQNQNSEF  120
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-37610612112LOB family transfactor Ramosa2.1
5ly0_B3e-37610612112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015971m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738461e-115AB473846.1 Arabidopsis thaliana ASL13 mRNA for ASYMMETRIC LEAVES2-like 13 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401849.12e-86LOB domain-containing protein 24
SwissprotP594682e-74LBD24_ARATH; LOB domain-containing protein 24
TrEMBLV4LLF85e-85V4LLF8_EUTSA; Uncharacterized protein
STRINGXP_006401849.18e-86(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.17e-77LOB domain-containing protein 24