PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016038m
Common NameEUTSA_v10016038mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 289aa    MW: 32588.8 Da    PI: 4.5567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016038mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.23.9e-05132150624
                      HHHHHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLr 24 
                       ++ErrRR+r+N++++ Lr
  Thhalv10016038m 132 LMAERRRRKRLNDRLSMLR 150
                      589*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.28E-9130188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-7132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0021132179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEMELTESRT QESNNLEGNN GEFMAMEQFV PSEWNLDYIC LDNLLQEDDN NDHTFSSLMD  60
LISQPPPLLH QPPQPSIPSA FDNPFLETFQ DVIESSYCPP LMLPASQGDN NNNSAPLKKS  120
NKKVQGQPSK NLMAERRRRK RLNDRLSMLR PFSFLFMDRT SILADAIDYM KELLDKINKL  180
QKLGSNYHLK ENVTTNESTV RNSPKFEVDQ MEINTHIDIC CSTKPGLLLS TVSTLEILGL  240
EIQQCVISCF GDFSLQASCS EVAEQRGFVT SEDIKQALFK NAGYGGRC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134141ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016038m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012283.10.0LOW QUALITY PROTEIN: transcription factor bHLH61
SwissprotQ9LXA91e-123BH061_ARATH; Transcription factor bHLH61
TrEMBLV4LMG90.0V4LMG9_EUTSA; Uncharacterized protein
STRINGXP_006399555.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-111bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]