PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016044m
Common NameEUTSA_v10016044mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 255aa    MW: 29085.8 Da    PI: 4.9959
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016044mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.48.6e-141159350
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeys 50
                     i n++ r+  + kR +g++KKA EL +LC++ +++i fs + ++l  ++
  Thhalv10016044m 11 IGNQRARKNAYKKRMQGLIKKAGELTILCNMSACLIFFSRDdNRLVVWP 59
                     789************************************8625666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.825149IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-14160IPR002100Transcription factor, MADS-box
CDDcd002669.32E-23285No hitNo description
SuperFamilySSF554552.22E-20294IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-6323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-131158IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRTKLKFAW IGNQRARKNA YKKRMQGLIK KAGELTILCN MSACLIFFSR DDNRLVVWPS  60
HEVAESLIER FYSLPDIERN QKAEDQESFI RTNTKKVENK LANCRKVITE LEMDHLMFQI  120
HNGRKLDDLS QTEIEKLISY SSKKIMGMGR ELGYTGHPFP CVYEPFMGNE SPSASDVASE  180
WRENSFSLMG SGSIYLMDQW FEDNPKVEEN CDEAHLPTMT SRFNLNVEPS DDDDDEDIKI  240
CKGENSKSGG ADDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016044m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399123.10.0MADS-box transcription factor PHERES 2
TrEMBLV4N5600.0V4N560_EUTSA; Uncharacterized protein
STRINGXP_006399123.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.16e-74AGAMOUS-like 96